Linear systems of graphs in Sage

Let \Gamma be a graph. A divisor on \Gamma is an element of the free group generated by the vertices V, {\mathbb{Z}}[V].

We say that divisors D and D^\prime are linearly equivalent and write D \sim D^\prime if D^\prime-D is a principal divisor, i.e., if D^\prime = D + \text{div}(f) for some function f : V \rightarrow {\mathbb{Z}}. Note that if D and D^\prime are linearly equivalent, they must have the same degree, since the degree of every principal divisor is 0. Divisors of degree 0 are linearly equivalent if and only if they determine the same element of the Jacobian. If D is a divisor of degree 0, we denote by [D] the element of the Jacobian determined by D. A divisor D is said to be effective if D(v) \geq 0 for all vertices v. We write D \geq 0 to mean that D is effective. The linear system associated to a divisor D is the set

|D| = \{ D^\prime \in \text{Div}(\Gamma ) : D^\prime \geq 0 \text{ and } D^\prime \sim D\},

i.e., |D| is the set of all effective divisors linearly equivalent to D. Note that if D_1 \sim D_2, then |D_1| = |D_2|. We note also that if \text{deg}(D)<0, then |D| must be empty.

Sage can be used to compute the linear system of any divisor on a graph.

def linear_system(D, Gamma):
    Returns linear system attached to the divisor D.

        sage: Gamma2 = graphs.CubeGraph(2)
        sage: Gamma1 = Gamma2.subgraph(vertices = ['00', '01'], edges = [('00', '01')])
        sage: f = [['00', '01', '10', '11'], ['00', '01', '00', '01']]
        sage: is_harmonic_graph_morphism(Gamma1, Gamma2, f)
        sage: PhiV = matrix_of_graph_morphism_vertices(Gamma1, Gamma2, f); PhiV
        [1 0 1 0]
        [0 1 0 1]
        sage: D = vector([1,0,0,1])
        sage: PhiV*D
        (1, 1)
        sage: linear_system(PhiV*D, Gamma1)
        [(2, 0), (1, 1), (0, 2)]
        sage: linear_system(D, Gamma2)
        [(0, 2, 0, 0), (0, 0, 2, 0), (1, 0, 0, 1)]
        sage: [PhiV*x for x in linear_system(D, Gamma2)]
        [(0, 2), (2, 0), (1, 1)]

    Q = Gamma.laplacian_matrix()
    CS = Q.column_space()
    N = len(D.list())
    d = sum(D.list())
    #print d
    lin_sys = []
    if d < 0:
        return lin_sys
    if (d == 0) and (D in CS):
        lin_sys = [CS(0)]
        return lin_sys
    elif (d == 0):
        return lin_sys
    S = IntegerModRing(d+1)^N
    V = QQ^N
    for v in S:
        v = V(v)
        #print D-v,v,D
        if D-v in CS:
    return lin_sys


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